FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424216
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56741.337526165915477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44901.0584230674939183No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10110.23832198691232767No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9610.2265355384992551No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8200.19329775397439042No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7020.16548173571953909No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.14520904444905425No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6000.14143738095687103No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5940.14002300714730231No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.13554415675033474No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5470.1289437456390141No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5390.12705791389292245No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5230.12328625040073923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4710.11102834405114376No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4600.10843532540026779No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4410.1039564750033002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)