FastQCFastQC Report
Wed 31 May 2023
EGAF00007930704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425997
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19690.46220982776874014No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18500.43427535874665785No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9870.23169177247727096No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9830.23075279872862955No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7010.16455514944940927No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6170.1448367007279394No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5800.13615119355300626No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5630.1321605551212802No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5620.13192581168411985No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5380.12629196919227131No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5160.12112761357474348No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5110.1199538963889417No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4970.11666748826869673No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4650.10915569827956535No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4580.10751249421944287No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4470.10493031641067894No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4340.10187865172759433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)