FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425997
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59801.4037657542189264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45841.07606391594307No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9800.2300485684171485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.22652741685974315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8050.18896846691408625No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.1685457878811353No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5970.1401418319847323No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5810.1363859369901666No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5600.13145632480979913No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5570.13075209449831807No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5540.130047864186837No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.12816991668955416No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.1258224823179506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4970.11666748826869673No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4810.11291159327413104No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4680.10985992859104642No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4300.1009396779789529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)