FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559159
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17330.3099297337608802No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17130.3063529336020702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14130.2527009312199213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11650.20834860925067825No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10280.18384752816283026No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9670.17293828767845998No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7980.1427143263365161No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.13001668577274086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7070.12643988561393094No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6990.12500916555040695No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.11964396531219205No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6280.11231152498663172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)