FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479692
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8250.1719853572709155No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7370.15364025249535118No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7230.15072171309923868No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5860.12216172043728059No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5850.12195325333755826No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5550.11569924034588862No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5190.10819442475588502No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4880.10173194466449305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)