FastQCFastQC Report
Wed 31 May 2023
EGAF00007930713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479692
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47190.9837562435896366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8870.18491031745369946No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8250.1719853572709155No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7700.16051966678618781No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6670.13904755551478867No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6240.1300834702267288No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6000.12508025983339308No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5970.12445485853422612No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5620.11715851004394486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5510.11486537194699932No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4990.10402508276143858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)