FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539422
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27920.5175910511621699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.25731245666658015No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13060.24211100029290614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9260.17166522685392885No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8660.16054220999514296No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8470.1570199213231941No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8170.15145841289380113No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA7640.14163308133520694No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7560.14015001242070216No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7430.1377400254346319No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6890.1277293102617246No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6460.11975781484626137No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6400.11864551316038277No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6330.1173478278601911No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6070.11252785388805055No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5890.10919094883041479No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5690.10548327654415282No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5530.10251713871514326No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5480.10159022064357776No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5440.10084868618632535No Hit

[OK]Adapter Content

Adapter graph