FastQCFastQC Report
Sun 21 May 2023
EGAF00007930719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541545
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70831.307924549206437No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12250.22620465519947558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11760.21715646899149654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.2045998024171583No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10160.18761137116952423No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9720.17948646926848186No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9100.16803774386246756No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.14347838129795307No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC7690.14200112640685447No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7670.14163181268407982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7050.13018308727806555No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6930.1279672049414176No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6860.12667460691170632No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6130.11319465603043144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)