FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523312
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68161.3024734766257988No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53321.018895037759501No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11710.2237670834989452No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10450.19968966887822182No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.1964411288103464No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8660.16548445286941632No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8110.15497447029687836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.14503775950102427No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7560.14446448772434034No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.13261687100620662No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6920.13223468982175068No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6490.12401779435594826No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6430.12287125080258049No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5640.10777509401657137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)