FastQCFastQC Report
Sun 21 May 2023
EGAF00007930725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509639
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16570.32513210331234466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16170.3172834104140382No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14090.27647020734284466No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13710.26901394908945353No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12860.2523354766805523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10950.214857968091139No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10940.21466175076868135No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10390.20386979803351No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10320.20249627677630636No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10040.19700219174749187No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9510.1866026736572358No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9280.1820896752407096No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8780.17227880911782653No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7790.1528532941945181No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7660.15030246900256847No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7250.14225755878180438No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7230.14186512413688906No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7140.1400991682347701No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6910.1355861698182439No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.1355861698182439No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6760.13264290998137895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6680.13107317140171768No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6630.13009208478942938No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6480.12714882495256447No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6470.12695260763010682No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6470.12695260763010682No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6300.12361691314832655No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.119888784021631No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6010.1179266107970544No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5950.11674930686230842No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.11498335096018945No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5760.11302117773561286No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5710.11204009112332454No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5640.11066656986612092No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.10890061396400195No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5490.107723310029256No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.10556491948222173No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5280.10360274625764512No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5150.10105192106569554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)