FastQCFastQC Report
Wed 31 May 2023
EGAF00007930726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483473
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26860.5555635992082287No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23600.4881348079417051No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19590.4051932579482205No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17080.35327722540865775No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16140.3338345678042No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15540.32142436082263126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14270.29515608937831067No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12130.2508930178107154No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12010.24841097641440163No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11090.22938199237599616No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC9400.19442657604457747No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9040.1869804518556362No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9040.1869804518556362No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8930.18470524724234857No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8810.18222320584603482No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8480.175397592006172No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8180.16919248851538762No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC7800.16133269076039405No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7750.16029850684526334No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7370.15243870909026977No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7280.15057717804303447No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7250.14995666769395602No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC7210.14912932056185144No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6660.1377532974954134No Hit
CGCCGCACGCAGGCTTTCGGCGTCTGGAACGCCGGCAGATGCCT6380.1319618675706813No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6010.1243089065987139No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5850.12099951807029556No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5740.11872431345700794No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5690.11769012954187721No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5540.11458757779648501No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5480.11334655709832814No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC5100.10548675934333458No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4990.10321155473004698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)