FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507013
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50270.991493314767077No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA48280.9522438280675249No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31140.6141854350874633No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30020.5920952717188711No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG25440.5017622822294497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21390.4218826736198085No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20650.4072873871084173No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG20430.40294824787530104No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19110.37691341247660315No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18270.3603457899501591No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18010.3552177163110216No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG17690.34890624106285245No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15790.3114318567768479No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC12720.25088114111472487No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11860.2339190513852702No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG11010.21715419525732083No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10780.21261782242269922No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10520.20748974878356174No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10420.2055174127685089No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10160.20038933912937146No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10040.198022535911308No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9520.18776638863303308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9430.1859912862194855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8670.1710015325050837No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8620.17001536449755725No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.1650845244599251No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8270.16311218844487224No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7370.14536116430939638No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7160.14121925867778537No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7010.1382607546552061No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6780.13372438182058446No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6740.13293544741456334No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6670.13155481220402632No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6660.13135757860252104No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6580.12977970979047873No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6310.12445440254983599No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6280.12386270174532014No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6270.12366546814381485No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6190.12208759933177256No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5990.11814292730166683No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5690.11222591925650821No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5380.10611167760984433No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5330.10512550960231788No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5330.10512550960231788No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5180.1021670055797386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)