FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534430
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32110.600827049379713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30280.5665849596766649No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19270.36057107572553937No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12580.23539097730292088No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC8900.16653256740826675No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8770.16410006923264037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8550.15998353385850345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7900.1478210429803716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7560.14145912467488725No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6730.1259285593997343No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6160.11526299047583406No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5830.10908818741462867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)