FastQCFastQC Report
Sun 21 May 2023
EGAF00007930734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538447
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29460.5471290581988572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18280.3394948806474918No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14370.2668786342945545No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13770.2557354762864312No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG8910.16547589642063193No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8430.15656137001413326No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8310.15433273841250855No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6890.12796059779328325No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6790.12610340479192939No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5690.10567428177703656No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5660.10511712387663039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)