FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538447
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32500.6035877254400155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30100.559015093407522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18610.34562361755195964No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13240.24589235337925552No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9260.17197607192537054No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC8930.1658473350209027No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8740.1623186683183303No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8030.14913259800871767No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7690.14281814180411442No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7050.13093210659544952No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6560.12183186088881542No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6190.11496024678380602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)