FastQCFastQC Report
Wed 31 May 2023
EGAF00007930741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407777
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34120.8367318411778987No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG14450.35436034891619683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12480.3060496300674143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10880.2668124980074894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8080.19814751690262078No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.16528641880243367No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6730.16504118672705917No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6560.16087224144569215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.15449620748595433No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5380.1319348565514975No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4730.11599477165215302No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4570.11207105844616053No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4400.1079021131647935No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4280.10495932826029913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)