FastQCFastQC Report
Sun 21 May 2023
EGAF00007930747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20220.5045023466095796No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18170.4533534934666697No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14400.35928950500385487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10520.26248094393337174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9730.24276992247829915No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9710.24227090927690492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9400.23453620465529418No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9230.23029459244344308No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9110.22730051323507763No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8990.22430643402671216No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7320.18263883171029288No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7010.1749041270886821No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6970.17390610068589366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.1734070874844994No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6850.17091202147752818No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6840.17066251487683107No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6790.16941498187334544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6630.16542287626219151No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6380.15918521124476348No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6200.1546940924322153No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5980.1492049472168786No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5920.1477079076126959No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5890.14695938781060452No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5650.14097122939387363No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.1384761633869024No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5530.13797715018550816No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4980.12425428714716646No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4980.12425428714716646No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4950.12350576734507512No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4740.11826612873043557No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4740.11826612873043557No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4540.11327599671649313No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4150.10354523928930538No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4150.10354523928930538No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4090.10204819968512267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)