FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411243
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29310.7127172985315251No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18750.45593481226428173No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18460.44888302050126083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15950.38784854696614895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14630.35575073618274355No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13810.33581118705971896No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13680.33265003902801993No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9640.2344112848121427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9040.21982137081968567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8040.195504847498924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8040.195504847498924No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7640.18577823817061934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7180.17459263744306894No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6350.15440992308683674No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6130.14906028795626916No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.14468331375853205No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5610.1364156958294731No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5250.12766174743399888No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.12766174743399888No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5010.12182578183701606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5010.12182578183701606No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4940.12012362520456275No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4840.11769197287248659No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4750.11550348577361803No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4430.1077221983109743No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4390.10674953737814383No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4260.1035883893464448No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC4240.10310205888002957No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4210.10237256318040673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)