FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438245
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19820.4522584399137468No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11340.25875936975892483No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10490.2393638261702929No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10080.2300083286745998No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9130.2083309564284818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8830.20148547045602347No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7900.18026446394140264No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7470.17045260071421237No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6430.14672158267635685No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6120.1396479138381499No Hit
GATGAACTGGTGCAGCCACTGGGCCTGCGTA5750.13120514780545128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5570.1270978562219763No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5290.12070873598101518No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4920.11226596994831659No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4610.10519230111010963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)