FastQCFastQC Report
Sun 21 May 2023
EGAF00007930752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421133
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10140.24077904130049174No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9780.2322306729702968No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8780.20848520538642185No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8510.20207392913877564No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7830.18592701118174068No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6830.16218154359786577No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6660.158144814108607No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5570.13226225444218334No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5400.1282255249529246No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4750.11279097102340592No Hit
GCCATCAGCGCCCATGTCGGCGATCAGACGGATGTCACGTGCCT4540.10780442283079217No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4320.1025804199623397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)