FastQCFastQC Report
Sun 21 May 2023
EGAF00007930753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421133
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42521.0096572816663618No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20200.47965844519427353No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10280.24410340676223424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10180.24172886000384677No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8850.2101473881172931No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8390.19922447302871066No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7010.16645572776296325No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6820.161944088922027No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5920.14057316809653958No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5740.1362989839314421No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5690.13511171055224833No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4920.11682770051266464No Hit
GATGAACTGGTGCAGCCACTGGGCCTGCGTA4820.11445315375427714No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4740.11255351634756716No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4290.10186805593482345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)