FastQCFastQC Report
Wed 31 May 2023
EGAF00007930761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428921
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44791.0442482415176688No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23480.5474201542941475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22610.5271366988326521No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC21020.49006693540302293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10620.2475980425299764No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10050.23430888205520367No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9350.21798886041951784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.21332599709503616No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8360.19490768696333358No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7010.16343335952308233No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6440.1501441990483096No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6040.14081847239934628No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5990.13965275656822584No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5680.13242531841527927No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.13149274575038294No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4940.1151727241146971No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4750.11074300395643953No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4660.10864471546042279No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4290.1000184183101317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)