FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421652
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11880.28174893039757903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10710.2540009296766053No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10050.23834821132118428No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8840.20965156100291238No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7890.187121133067079No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7510.1781089618927457No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7210.17099408991300885No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5790.1373170292089211No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5520.13091364442715794No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5460.1294906700312106No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5170.12261296045079828No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5110.12118998605485092No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5050.11976701165890356No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4550.10790889169267548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)