FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421652
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22680.5378843216681054No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12000.2845948791894738No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10680.25328944247863167No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10250.24309145930767553No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9930.23550226252928957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.20111371462722813No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7550.17905761149004393No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7180.17028260271503515No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6990.16577651712786848No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6180.14656636278257898No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5930.14063730279946496No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5750.13636837961162285No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.13589405481297373No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5480.12996499482985968No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4680.11099200288389478No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4490.10648591729672811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)