FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401052
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10250.25557783030629444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9930.2475988151162443No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9780.24385865174590826No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8500.21194259098570759No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7320.1825199724723976No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7270.18127325134895228No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7160.1785304648773725No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5700.14212620807276863No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5520.1376380120283654No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5090.12691621036673548No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4920.12267735854702133No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4740.11818916250261813No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4690.11694244137917277No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4580.11419965490759303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)