FastQCFastQC Report
Sun 21 May 2023
EGAF00007930765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401052
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41831.0430068918743702No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20900.5211294296001516No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10500.26181143592352113No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10160.25333373228409284No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9870.24610274976810986No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7970.198727347077187No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.18401603782053202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.17653571107985996No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6810.16980341701325513No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6090.15185063283564226No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5860.1461157156677937No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5460.136141946680231No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.13090571796176056No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5070.12641752191735736No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4400.10971145886318981No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4020.10023637832500523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)