FastQCFastQC Report
Sun 21 May 2023
EGAF00007930769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405717
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29360.7236571304628595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24990.6159465834559558No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15440.3805608342761087No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13400.33027948052460215No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13020.3209133460022627No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11250.2772868773061025No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10530.25954051715851195No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10430.25707574491579105No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10290.2536250637759818No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9460.23316745416139822No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7350.18116075983998697No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6770.1668650808322057No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6000.14788633456325467No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5460.13457656445256178No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4870.12003440822050837No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA4690.11559781818361074No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4290.1057387292127271No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4140.10204157084864572No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4100.10105566195155738No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4080.10056270750301319No Hit

[OK]Adapter Content

Adapter graph