FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388472
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13940.35884182128956527No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13190.33953541053151837No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11240.2893387425605964No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10910.28084392182705575No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10590.2726065199036224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9250.23811239934924525No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9150.2355382112481723No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8860.22807306575506084No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8270.21288535595873062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6700.17247060277188575No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG5880.15136226034308778No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5810.14956032867233673No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5310.13668938816697213No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5210.13411520006589922No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5080.1307687555345044No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4990.1284519862435388No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4700.12098684075042732No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA3960.10193784880248771No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG3940.1014230111822731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)