FastQCFastQC Report
Wed 31 May 2023
EGAF00007930771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388472
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37420.9632611874214874No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26710.6875656417965774No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23470.6041619473218147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14130.3637327786816038No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12170.31327869190057456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11680.30066517020531724No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11090.285477460408987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9760.2512407586647171No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9530.24532012603224942No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9430.2427459379311765No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.1776189789740316No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6460.16629255132931076No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5490.1413229267489034No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5220.13437261887600652No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5080.1307687555345044No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA4540.11686813978871065No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4230.10888815667538458No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4180.10760106262484813No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4060.10451203690356062No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3970.102195267612595No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG3900.10039333594184395No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3900.10039333594184395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)