FastQCFastQC Report
Wed 31 May 2023
EGAF00007930772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406129
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16620.40922957976406504No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14380.35407469055398655No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11830.29128675864072745No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11290.27799049070615495No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10580.2605083606440318No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9280.22849882672746838No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8220.2023987452262705No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6730.16571089481420928No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6470.1593089880308966No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5990.14749008320016546No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5740.14133440360082633No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5250.12926927158612164No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5210.1282843628502274No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4840.11917395704320549No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4510.11104845997207784No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4130.10169182698108238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)