FastQCFastQC Report
Wed 31 May 2023
EGAF00007930773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406129
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40190.9895870523897579No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35830.8822320001772835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25210.6207387307973574No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12780.31467834111821613No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11380.28020653536191703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11190.27552821886641926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10450.25730740725237544No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6680.16447975889434147No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6680.16447975889434147No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6520.16054012395076442No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.159062760846923No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5180.1275456812983067No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4700.11572677646757557No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4420.10883241531631577No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4180.10292296290095018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)