FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444039
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22300.502208139375145No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19210.43261965728235585No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16570.37316542015453597No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14840.3342048784003207No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11430.25740982211022No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11190.2520048914622364No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10820.24367229004659502No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10570.23804215395494538No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10150.22858352532097403No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8640.19457750332741042No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7380.1662016174254964No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6850.15426572891119925No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6530.14705915471388775No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6350.14300545672790002No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6120.13782573152358238No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.13174518454460082No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5390.12138573413596554No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5370.12093532324863356No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5220.11755724159364381No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5030.11327833816399009No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5030.11327833816399009No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4630.10427012041735073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)