FastQCFastQC Report
Sun 21 May 2023
EGAF00007930779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444039
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49861.1228743421185976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16650.37496706370386385No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15050.33893419271730635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.31641364835070795No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12500.28150680458248034No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11780.26529201263852953No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10840.24412270093392696No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10690.24074461927893723No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.23038516887030194No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8960.2017840775247219No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7940.17881312227079155No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7830.17633586239046573No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7410.16687723375649438No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.15539175612952916No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.1504372363688775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6310.1421046349532361No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5840.13151997910093483No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5770.12994354099527294No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5670.1276914865586131No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5570.12543943212195324No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5560.12521422667828727No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4710.1060717639666786No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4570.10291888775535482No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4540.10224327142435688No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4470.10066683331869498No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4460.100441627875029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)