FastQCFastQC Report
Sun 21 May 2023
EGAF00007930782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425883
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24450.5741013376913378No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19640.4611595203377453No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18110.4252341605558334No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14570.34211273988395874No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11630.27307969559714756No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11150.2618089944890968No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9130.21437812732604963No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7700.18080083027498162No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7030.16506880997832737No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6770.1589638468781332No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5590.13125670665417496No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4740.11129817344200169No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4440.10425398524946992No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4340.10190592251862601No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4290.10073189115320405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)