FastQCFastQC Report
Wed 31 May 2023
EGAF00007930783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425883
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48921.1486722879288445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42370.9948741790585678No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25110.5895985517149076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22840.5362975277247507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14760.34657405907256217No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10090.23691952954215126No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7910.18573176200975386No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7840.1840881180981631No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7230.1697649354400152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6300.14792795204316678No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5570.13078709410800618No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5310.124682131007812No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4640.10895011071115775No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4630.10871530443807337No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4600.10801088561882019No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4590.10777607934573581No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4400.10331476015713237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)