FastQCFastQC Report
Wed 31 May 2023
EGAF00007930785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410237
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18870.4599780127097264No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10410.2537557558191972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9140.22279804113232107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8920.21743528740703544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8520.20768482608833433No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7160.1745332576047504No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7150.1742894960717829No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6820.16624536548385446No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6610.16112637329153634No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5670.13821278919258867No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT5480.13358132006620563No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.1255371894782772No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5120.12480590487937461No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5000.12188076648376425No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4800.1170055358244137No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4750.11578672815957605No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4660.1135928743628683No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4210.10262360537932952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)