FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390065
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39541.0136772076448797No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17970.4606924486944484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10250.2627767167010626No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8540.21893786932947074No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.19560842423698616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6910.17714996218578954No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6160.15792239754912643No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5990.15356414956481612No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5820.1492059015805058No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5110.13100380705779807No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT4840.12408188378859933No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4820.12356914873162166No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4690.12023637086126672No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4530.11613449040544525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4450.11408355017753452No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4410.11305808006357916No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4330.11100713983566843No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4060.10408521656646968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)