FastQCFastQC Report
Sun 21 May 2023
EGAF00007930788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408838
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8440.20643873612531125No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6100.1492033519389098No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5730.1401533125590087No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5720.13990871690009246No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5350.13085867752019137No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5150.12596676434186646No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5050.12352080775270402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4940.1208302555046253No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4840.11838429891546284No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4560.11153562046580798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)