FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408838
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.24019293705575315No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8860.21671175379979357No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8680.21230903193930115No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6490.15874258263664337No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6410.1567858173653134No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6120.14969254325674228No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.14846956496216104No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5910.14455603441950113No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5850.14308846046600365No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5780.14137629085358994No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5490.13428301674501883No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5470.13379382542718632No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5260.12865731658994517No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4870.1191180858922116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)