FastQCFastQC Report
Sun 21 May 2023
EGAF00007930790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388913
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7490.1925880595403085No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5750.14784797628261334No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.14347681872295348No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5480.14090554957021237No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5350.13756289967164895No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5260.13524875743418194No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4670.12007826943300944No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4580.11776412719554244No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4570.11750700028026832No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4560.11724987336499423No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4290.11030744665259326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)