FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388913
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39441.0141085538410903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8890.2285858276786839No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7980.2051872783887399No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6370.16378984502960817No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6020.15479040299501431No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.15299051458809554No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5890.1514477530964509No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5780.14861935702843568No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5730.1473337224520651No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5500.14141980340076057No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5360.13782002658692305No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5290.13602013818000427No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4640.11930688868718711No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4620.11879263485663888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)