FastQCFastQC Report
Wed 31 May 2023
EGAF00007930959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24370427
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC665117127.29197563916299No Hit
GTCTCTCG636872326.13299717727556No Hit
CGGAGGGA628862925.804344749478535No Hit
TCAGAAAT471844319.361347259118602No Hit
GTCTCTCA458690.18821582403952133No Hit
CGGAGGAA341930.14030529707173373No Hit
AATCTCTA328550.13481503627326677No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)