FastQCFastQC Report
Wed 31 May 2023
EGAF00007930962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25148870
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC684620527.222714181591464No Hit
GTCTCTCG655669326.07152130493338No Hit
CGGAGGGA646067825.689734767407046No Hit
TCAGAAAT486616419.34943399047353No Hit
GTCTCTCA477450.18984948429094428No Hit
AATCTCTA349160.13883725193219418No Hit
CGGAGGAA345530.13739384711917474No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)