FastQCFastQC Report
Wed 31 May 2023
EGAF00007930971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31014706
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGATACT814842326.272772019828274No Hit
AGATCTGG790957625.502663155988003No Hit
CACCGCTC774617724.97581953541652No Hit
GTTGAGAA674101621.734902146098047No Hit
CACCGCTA692910.2234133704185363No Hit
AGATCTGA531840.17147994245052653Illumina PCR Primer Index 9 (100% over 8bp)
TCGATACA325090.10481801762041529No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)