FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007930974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31994313
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGATACT839093926.226345288301705No Hit
AGATCTGG812423725.39275339339213No Hit
CACCGCTC798143224.94640844452575No Hit
GTTGAGAA691960621.627612382238055No Hit
CACCGCTA718090.22444301273166892No Hit
AGATCTGA543480.1698676886732964Illumina PCR Primer Index 9 (100% over 8bp)
CCCCGCTC429960.13438638298000022No Hit
TCGATACA354110.11067904474148264No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)