FastQCFastQC Report
Wed 31 May 2023
EGAF00007930980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32355468
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGATACT849342726.250360526387688No Hit
AGATCTGG821467925.388843085193514No Hit
CACCGCTC808738624.995422721130165No Hit
GTTGAGAA700036221.63579275070291No Hit
CACCGCTA735960.22746078035403478No Hit
AGATCTGA554880.17149496956743138Illumina PCR Primer Index 9 (100% over 8bp)
TCGATACA370940.11464522781744341No Hit
CCCCGCTC346180.10699273458198783No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)