FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007930989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33009604
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTACC857749125.984834595410476No Hit
GCGCAGAA836116225.32948289837103No Hit
CGAACCTG783762523.74346871898251No Hit
TATGGTGT775134323.482084183742405No Hit
ATCTTACA624020.18904195276017247No Hit
CGAACCTA571690.17318899069495047No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)