FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007930998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33499951
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC887918426.505065634275105No Hit
TCTCAGTG817575824.40528345847431No Hit
ATAGGCCA803520623.985724635836032No Hit
GAGACTAT790502323.597118097277217No Hit
TCTCAGTA541830.1617405350831707No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)