FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32736515
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC869360526.556293484508046No Hit
TCTCAGTG799020824.407631661464272No Hit
ATAGGCCA787263824.04849141700025No Hit
GAGACTAT776185523.710083373260716No Hit
TCTCAGTA528290.1613763713089191No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)