FastQCFastQC Report
Wed 31 May 2023
EGAF00007931004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33905967
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC898007326.485228986390506No Hit
TCTCAGTG827981224.419925849629948No Hit
ATAGGCCA813699123.998699108036057No Hit
GAGACTAT801858523.649480340731767No Hit
TCTCAGTA545200.1607976554687262No Hit
ATAGGCAA340880.1005368760017964No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)